BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB029C06SP1|AL429034
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1506 1544 0.0
>3x_Contig1506
Length = 7652
Score = 1544 bits (775), Expect = 0.0
Identities = 878/917 (95%), Gaps = 1/917 (0%)
Strand = Plus / Minus
Query: 1 agaatggatcaaccgtgacagatttgtcttgtccaacggncaagcctgtgcattgttgta 60
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 4482 agaatggatcaaccgtgacagatttgtcttgtccaacggtcatgcctgtgcattgttgta 4423
Query: 61 ctctttgtwacacttgttcggttacgacatggccatcgaagatttgaagcatttcagaca 120
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 4422 ctctttgttacacttgttcggttacgacatgtccatcgaagatttgaagcatttcagaca 4363
Query: 121 tccgggttctaagacccctggtcacccagaatttgaattgccgggtgtagaagttacaac 180
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 4362 tctgggttctaagacccctggtcacccagaatttgaattgccgggtgttgaagttactac 4303
Query: 181 cggaccattgggtcaaggtatctctaacgctgaaggtaaggctaatgcwcaagccaactt 240
||| |||||||||||||||||||||||||||| |||| ||||| ||| |||||||||||
Sbjct: 4302 cggtccattgggtcaaggtatctctaacgctgttggtatggctattgctcaagccaactt 4243
Query: 241 cgctgccacttacaacaagccagattacgaattgtctgattcttacacttacgtttwcta 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4242 cgctgccacttacaacaagccagattacgaattgtctgattcttacacttacgttttctt 4183
Query: 301 gggngacggttgtttgcaagaaggwgtttcttctgaagcctcttctttggcaggtcattt 360
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 4182 gggtgacggttgtttgcaagaaggtgtttcttctgaagcctcttctttggcaggtcattt 4123
Query: 361 gaggttgaagaacttgattgccttctatgatgataaccaaattaccatcgakggtaacat 420
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 4122 gaggttgaagaacttgattgccttctatgatgataaccaaattaccatcgatggtaacat 4063
Query: 421 caacgtttctwtcgatgaagacgttagcaagagatacgaagcctacggatgggaagtcta 480
|||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 4062 caacgtttctttcgatgaagacgttagcaagagatacgaagcctacggttgggaagtctt 4003
Query: 481 gcacgncgaaaacgggaacgacgatttggatgcgatcaggaaagcattggaacaagcaaa 540
||||| ||||||||| ||||||||||||||||| ||||| ||||| ||||||||||| ||
Sbjct: 4002 gcacgtcgaaaacggtaacgacgatttggatgctatcagtaaagctttggaacaagctaa 3943
Query: 541 gctttctgaaagaccaacatagaacaagaagaccaccacaatcggtttcggttctctgaa 600
||||||||| |||||||| | || |||| ||||||||| ||||||||||||||||||||
Sbjct: 3942 gctttctgatagaccaactttgatcaagttgaccaccactatcggtttcggttctctgaa 3883
Query: 601 tgctggttctcactccgtacacggngccccaatgaaggctgatgatgtcaagcaattgaa 660
|||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 3882 tgctggttctcactccgttcacggtgccccattgaaggctgatgatgtcaagcaattgaa 3823
Query: 661 ggtcaaattcggtttcaacccagaagaatccttcgttgttccacaagaagtttacgatct 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3822 ggtcaaattcggtttcaacccagaagaatccttcgttgttccacaagaagtttacgatct 3763
Query: 721 ttacaacaaatccaccatcgaaccaggtatcgaagccaacaagcaatgggatgctttatt 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3762 ttacaacaaatccaccatcgaaccaggtatcgaagccaacaagcaatgggatgctttatt 3703
Query: 781 ggacgcttacgttggccagttcccagaattaggtgctgaagtcaagagaagattagcagg 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3702 ggacgcttacgttggccagttcccagaattaggtgctgaagtcaagagaagattagcagg 3643
Query: 841 tgaattcccagaaggdtgggaat-caagttgccaacttacaccccagaagactctgccgt 899
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 3642 tgaattcccagaaggttgggaatccaagttgccaacttacaccccagaagactctgccgt 3583
Query: 900 cgcctccagaaagttgt 916
|||||||||||||||||
Sbjct: 3582 cgcctccagaaagttgt 3566
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.712 1.31
Gapped
Lambda K H
1.38 0.712 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5351
Number of Sequences: 1807
Number of extensions: 5351
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (12.0 bits)
X2: 15 (29.9 bits)
S1: 12 (24.4 bits)
S2: 50 (100.1 bits)